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Commits on Mar 7, 2024

• Remove redifinition of dynamic library flags

  rwk-unil

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  a593fce

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Commits on Apr 8, 2023

• Adding a tool to simulate chrX and family datasets + reforge of all the example datasets

  odelaneau

  committed
  4ae926a

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Commits on Mar 23, 2023

• Add maps and chunks resources

  odelaneau

  committed
  d8fe10f

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Commits on Mar 18, 2023

• Integration of xcf in phase_[common/rare]

  odelaneau

  committed
  8474229

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Commits on Mar 13, 2023

• Clean-up

  odelaneau

  committed
  8212e62

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Commits on Mar 11, 2023

• Fix small ligate scaffold bugs

  odelaneau

  committed
  429adde

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• Adapt ligate for PED file

  odelaneau

  committed
  c232774

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Commits on Feb 8, 2023

• update docs, v1.0.0, chunking, pipeline

  RJHFMSTR

  committed
  09010a6

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Commits on Dec 6, 2022

• makefile_static_robin_desktop

  RJHFMSTR

  committed
  8ff4836

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Commits on Nov 4, 2022

• [Fix] Fixed abusive usage of "using" directive

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  rwk-unil

  committed
  0f65ee2

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• Replaced duplicated files by symlinks

  rwk-unil

  committed
  6625155

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• Uniformized all "utils" files

  rwk-unil

  committed
  5c68d71

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Commits on Oct 14, 2022

• Merge branch 'main' of https://github.com/odelaneau/shapeit5.git into main

  

  Simone Rubinacci

  committed
  f2ea6a9

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• Copyright update

  

  Simone Rubinacci

  committed
  9dbf127

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• Fix IBD2 issue

  odelaneau

  committed
  07b70bb

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Commits on Oct 7, 2022

• Many small changes

  odelaneau

  committed
  f91288b

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Commits on Sep 13, 2022

• Remove feature in switch to ignore MAC1

  odelaneau

  committed
  9cb4051

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Commits on Sep 1, 2022

• Add --min-PP option in switch

  odelaneau

  committed
  066ca1e

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Commits on Aug 30, 2022

• Fix release commit/date labeling + remove singleton in calibration computations

  odelaneau

  committed
  4bb1244

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Commits on Aug 26, 2022

• Fix another bug in switch calibration

  odelaneau

  committed
  8d5a513

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• Fix bug in switch

  odelaneau

  committed
  ba2720c

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Commits on Aug 25, 2022

• Fix bug in switch calibration

  odelaneau

  committed
  22e5276

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• Adding PP reading in switch + calibration

  odelaneau

  committed
  48e5b46

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Commits on May 18, 2022

• Many small changes before Robin takes over

  odelaneau

  committed
  0d1baa2

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Commits on May 2, 2022

• Update scripts + fixed bug in phase1 --pedigree

  odelaneau

  committed
  542bd47

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Commits on Apr 26, 2022

• Plenty of updates on phase2

  odelaneau

  committed
  b603630

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Commits on Apr 20, 2022

• Phase2: set minimal threashold value to 0.005 + shuffle sample processing order

  odelaneau

  committed
  b41bfa3

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Commits on Apr 17, 2022

• Add flip calculations into switch

  odelaneau

  committed
  1657a61

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Commits on Mar 30, 2022

• Add test data 10k and lots of bug fixes

  odelaneau

  committed
  222f971

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Commits on Mar 29, 2022

• Bugfix in switch

  odelaneau

  committed
  10c69da

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Commits on Mar 19, 2022

• Bugfix in switch for mendel resolution

  odelaneau

  committed
  7021a8f

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Commits on Mar 18, 2022

• Template of phase2 mode

  odelaneau

  committed
  d04bec8

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Commits on Mar 16, 2022

• BugFix Makefiles Jura

  odelaneau

  committed
  0e0a9b8

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• BugFix Makefiles Jura

  odelaneau

  committed
  afe3d8b

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• Update docker scripts and makefiles

  odelaneau

  committed
  d102b19

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