soumyakundu
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Biological sequence analysis for the modern age.
A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.
Statistical Rethinking Course Winter 2020/2021
utils/notes for LD calculation from 1000 genomes panel
lsgkm+gkmexplain with regression functionality. Builds off kundajelab/lsgkm (which has gkmexplain), which in turn builds off Dongwon-Lee/lsgkm (the original lsgkm repo)
An attribution prior for deep learning based on Fourier transforms
In-silico Saturation Mutagenesis implementation with 10x or more speedup for certain architectures.
Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
python module to plot beautiful and highly customizable genome browser tracks
Codebase for testing whether hidden states of neural networks encode discrete structures.
Domain Adaptation Based on the Triplet Loss
Model summary in PyTorch similar to `model.summary()` in Keras
A collection of implementations of adversarial domain adaptation algorithms
Some custom dataset examples for PyTorch
Domain-Adversarial Neural Network in Tensorflow
keras accessibility models: code to train, predict, interpret
Keras implementation of a gradient reversal layer for the Tensorflow backend
fast.ai early development experiments
Contains files for the deep learning in genomics primer.