Visualization of Functional Enrichment Result

AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

MSigDB gene sets for multiple organisms in a tidy data format

R package for pathway analysis in scRNA-seq data

Scenario analysis notebooks for the IPCC Special Report on Global Warming of 1.5°C

A tutorial for pathway visualization using tidyverse, igraph, and ggraph

PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

A web application to visualize and edit pathway models

A project for exploring differentially active signaling paths related to proteomics datasets

Differential gene expression analysis and pathway analysis of RNAseq data

python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.

A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.

Disease pathways in the human interactome

Explore biomolecular pathways in Reactome from the command-line or a Python script

GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF

Harmonizing pathway databases using Biological Expression Language (BEL)

A manually curated database of human gut metabolic modules.

An R package for multi-dimensional pathway enrichment analysis

GenoCraft: A Comprehensive, User-Friendly Web Platform for High-Throughput Omics Data Analysis and Visualization (https://arxiv.org/pdf/2312.14249)