Structural variation caller using third generation sequencing
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Dec 16, 2024 - Python
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structural-variations
Here are 13 public repositories matching this topic...
Structural variant and indel caller for mapped sequencing data
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Dec 21, 2022 - C++
Toolset for SV simulation, comparison and filtering
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Dec 1, 2023 - C++
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
docker mapper next-generation-sequencing alignment long-read pacbio bioconda oxford-nanopore structural-variations
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Mar 18, 2024 - C++
Structural variation and indel detection by local assembly
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Nov 19, 2024 - C++
Application of pan-genome for population
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Oct 17, 2024 - Perl
novoBreak: local assembly for breakpoint detection in cancer genomes
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May 2, 2018 - Perl
Micro DNA identification
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Aug 5, 2021 - Shell
A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)
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Mar 12, 2018 - HTML
MAMnet uses a deep learning network to call genetic variants from third generation DNA sequencing data.
bioinformatics deep-neural-networks deep-learning genomics structural-variations structural-variation-calling
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Oct 26, 2023 - Python
A snakemake pipeline to call structure variants from ONT data
bioinformatics bioinformatics-pipeline structural-variations structural-variants long-read-sequencing structural-variation-calling oxford-nanopore-sequencing
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Dec 15, 2024 - Python
Pipeline for SV detection using 10X genomics data
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Oct 8, 2018 - Python
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