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Commits on Feb 11, 2016

• fix assertion failure report on bio-bwa-help mailing list

  Show description for 099c24f
  srl147

  committed
  099c24f

Commits on Apr 30, 2014

• r737: fixed an assertion when failed to convert sa

  Show description for d59d788
  lh3

  committed
  d59d788

Commits on Jan 5, 2014

• fix duplicate PG lines in bwape and bwase

  bpow

  committed
  c26ba4e

Commits on Jun 14, 2013

• Check that paired reads have the same QNAME

  Show description for 20dc9dd
  jmarshall

  committed
  20dc9dd

Commits on May 28, 2013

• r401: bugfix - forgot to change sampe

  Show description for 7361975
  lh3

  committed
  7361975

Commits on May 24, 2013

• r397: multi changes/bugfixes to bwa-backtrack

  Show description for 599e840
  lh3

  committed
  599e840

Commits on May 2, 2013

• Reduce dependency on utils.h - new malloc wrapping scheme.

  Show description for 96e445d
  

  Rob Davies

  committed
  96e445d

Commits on Apr 29, 2013

• Ensure exit status of 1 if given invalid options or index files are not found.

  Show description for 0aa7e0a
  

  Rob Davies

  committed
  0aa7e0a

Commits on Apr 22, 2013

• Merge branch 'master' into master_fixes

  

  Rob Davies

  committed
  4cb5110

Commits on Apr 19, 2013

• r381: fixed a bug when upper bound < max read len

  lh3

  committed
  3f8caef

• r378: bugfix - wrong CIGAR

  Show description for be11e27
  lh3

  committed
  be11e27

Commits on Mar 8, 2013

• Merge branch 'master' into master_fixes

  Show description for aabd990
  

  Rob Davies

  committed
  aabd990

Commits on Mar 5, 2013

• r329: ditch stdaln.{c,h}; no changes to bwa-mem

  Show description for 98f8966
  lh3

  committed
  98f8966

Commits on Mar 1, 2013

• Merge branch 'master' into master_fixes

  Show description for 3d33ab0
  

  Rob Davies

  committed
  3d33ab0

Commits on Feb 23, 2013

• support read group in bwa-mem

  lh3

  committed
  ee4540c

• cleanup index loading code

  lh3

  committed
  cfa7165

Commits on Feb 12, 2013

• code backup

  lh3

  committed
  2fc469d

• removed color-space support

  Show description for 6ad5a3c
  lh3

  committed
  6ad5a3c

• Multiple changes:

  Show description for e5ab59d
  lh3

  committed
  e5ab59d

Commits on Dec 16, 2012

• Use wrapper functions to catch system errors

  Show description for b081ac9
  

  Rob Davies

  committed
  b081ac9

Commits on Mar 29, 2012

• Tim's suggestion suffix file name with .64

  lh3

  committed
  bdc953c

Commits on Nov 28, 2011

• bugfix: bwa-sw PE segfault in rare case

  

  Heng Li

  committed
  64e353c

Commits on Nov 19, 2011

• avoid duplicated XA tags

  

  Heng Li

  committed
  dc40089

Commits on Nov 12, 2011

• crash under non-typical setting (by John Marshall)

  

  Heng Li

  committed
  56a1865

Commits on Oct 24, 2011

• bugfix: integer overflow and strand error in sampe

  

  Heng Li

  committed
  7b4266a

Commits on Oct 20, 2011

• PE seems working; more testing needed

  

  Heng Li

  committed
  ec307a1

Commits on Oct 19, 2011

• fixed a couple of gcc warnings

  

  Heng Li

  committed
  d6155ec

Commits on Jan 19, 2011

• Put BC: to both ends

  

  Heng Li

  committed
  1d7d8be

Commits on Jan 15, 2011

• Added barcode support

  

  Heng Li

  committed
  51d354c

• Added an option to accept Illumina 1.3+ fastq

  

  Heng Li

  committed
  10721ca

Commits on Jan 14, 2011

• Update to the latest modfication 0.5.9rc1-2. Update ChangeLog

  

  Heng Li

  committed
  5e30884

• Imported from my local bwa repository, the master repository.

  

  Heng Li

  committed
  007c3eb

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