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Commits on Jan 3, 2023

• Merge pull request #458 from neoformit/patch-1

  Show description for 544ff9c
  pchaumeil

  authored
  544ff9c

Commits on Dec 21, 2022

• Fix deprecated np.bool in prodigal_biolib.py

  Show description for cecdfcc
  neoformit

  authored
  cecdfcc

Commits on Dec 1, 2022

• Merge pull request #455 from Ecogenomics/issue450

  Show description for adceaba
  pchaumeil

  authored
  adceaba

• refactor(Fix issue #448): Refactor code to return warning instead of crashing

  Show description for 2119640
  pchaumeil

  committed
  2119640

• docs(installation): Update Bioconda install documentation and README.md.

  aaronmussig

  committed
  08ef9cd

Commits on Nov 29, 2022

• Merge pull request #453 from Ecogenomics/issue450

  Show description for 8bf35e7
  pchaumeil

  authored
  8bf35e7

Commits on Nov 28, 2022

• fix(Fix issue #450): Fix symlink for infer when out_dir finished with slash

  pchaumeil

  committed
  37e7473

• Merge pull request #452 from Ecogenomics/issue417

  Show description for 8a14ac3
  pchaumeil

  authored
  8a14ac3

• Merge branch 'staging' into issue417

  pchaumeil

  authored
  ab21e2a

• fix(Fix issue #417): Add a line in the log file listing how many genomes have a warning.

  pchaumeil

  committed
  1900c0c

Commits on Oct 18, 2022

• Improved GTDB to NCBI majority vote translation through better handling of case where two taxa have exactly 50% of the vote

  donovan-h-parks

  committed
  ea7f601

Commits on Oct 11, 2022

• Update README.md

  donovan-h-parks

  authored
  99da937

• Update README.md

  donovan-h-parks

  authored
  1d50db2

Commits on Sep 30, 2022

• docs(2.x.x): Update documentation for next release.

  aaronmussig

  committed
  64183b7

• fix(--gtdbtk_classification_file): Add method to parse taxonomy from classify file.

  Show description for 0f124fa
  aaronmussig

  committed
  0f124fa

• refactor(gtdbtk.files.classify_summary): Added type hints.

  aaronmussig

  committed
  7d45a9b

• fix(tigrfam_search): Fixed typo in stderr for subprocess.Popen.

  aaronmussig

  committed
  7054c69

Commits on Sep 29, 2022

• Merge pull request #436 from lfenske-93/master

  Show description for 4503e4b
  aaronmussig

  authored
  4503e4b

• Merge pull request #437 from Ecogenomics/#433

  Show description for 4a932df
  aaronmussig

  authored
  4a932df

• fix(root/de_novo_wf): Add additional checks to outgroup_taxon to restrict ranges of input.

  Show description for 46804fb
  aaronmussig

  committed
  46804fb

Commits on Sep 26, 2022

• Update tigrfam_search.py

  Show description for e109126
  lfenske-93

  authored
  e109126

Commits on Sep 12, 2022

• refactor(gtdbtk.io): Refactored package to be files instead of io.

  aaronmussig

  committed
  b249cb4

Commits on Sep 11, 2022

• docs(logo): Added GTDB-Tk illustrator document for logo.

  aaronmussig

  committed
  fdbb0d3

Commits on Jul 22, 2022

• Update README.md

  donovan-h-parks

  authored
  7eb79bd

• Update README.md

  donovan-h-parks

  authored
  46011a4

Commits on Jul 6, 2022

• Merge pull request #414 from Ecogenomics/staging

  Show description for 3656d71
  pchaumeil

  authored
  3656d71

• increment Tk version

  pchaumeil

  committed
  d1085a1

• small typo updates for doc

  pchaumeil

  committed
  6bc01fa

Commits on Jul 4, 2022

• Merge pull request #412 from Ecogenomics/issue_399

  Show description for 314a651
  pchaumeil

  authored
  314a651

• Merge pull request #411 from Ecogenomics/write_doc

  Show description for 81abbe6
  pchaumeil

  authored
  81abbe6

Commits on Jul 1, 2022

• Updated requirements

  aaronmussig

  committed
  4d9dcf4

• write documentation for convert_to_itol

  pchaumeil

  committed
  6d18885

• Merge pull request #410 from crusher083/master

  Show description for f98775a
  pchaumeil

  authored
  f98775a

• write documentation for Tk v2

  pchaumeil

  committed
  e27e3fd

Commits on Jun 30, 2022

• convert_to_itol docs

  valentynbez

  authored
  830f5cb

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