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Issues list

Add new config to trackList.json
#150 by mpoelchau was closed May 30, 2024
@mpoelchau
1
Investigate effect of NCBI assembly page deprecation
#147 by mpoelchau was closed Apr 7, 2023
@amcooksey
2
Gff release number is not a number anymore bug Something isn't working
#145 by mpoelchau was closed Nov 2, 2023
@mpoelchau
bigwig_symlink-gaps step in createsymlink.cwl needs to be optional bug Something isn't working
#144 by mpoelchau was closed Jun 27, 2023
@amcooksey
10
Update yml file
#143 by mpoelchau was closed Dec 15, 2022
@mpoelchau
1
Update final-workflow.cwl to add functional annotations to gff file
#141 by mpoelchau was closed Nov 2, 2023
@mpoelchau
15
Update yml files to change the data downloads directory
#137 by mpoelchau was closed Apr 26, 2022
@mpoelchau
1
add functional annotation directory to create-symlink.cwl
#133 by mpoelchau was closed Apr 26, 2022
@ZhiXuanLai
2
make gzip step in create-symlink.cwl optional
#132 by mpoelchau was closed Apr 26, 2022
@ZhiXuanLai
1
Move working_files directory over during movedata workflow
#131 by mpoelchau was closed Apr 26, 2022
@ZhiXuanLai
4
Generate new release
#128 by mpoelchau was closed May 26, 2022
@mpoelchau @ZhiXuanLai
1
Add symlink to analyses directory in jbrowse directory
#121 by mpoelchau was closed Mar 28, 2022
@ZhiXuanLai
2
Rsync analyses directory to apollo servers
#118 by mpoelchau was closed Jan 14, 2022
@mpoelchau @ZhiXuanLai
1
Update linkouts to analysis pages in readme files
#117 by mpoelchau was closed Apr 26, 2022
@mpoelchau @ZhiXuanLai
2
remove chmod step from movedata workflow
#106 by mpoelchau was closed Sep 21, 2021
@suryasaha @mpoelchau
2
update permissions of moved files
#102 by mpoelchau was closed Jul 29, 2020
1
@HsiuKangHuang
2
Create branch without flatfile-to-json.cwl
#101 by mpoelchau was closed Jul 30, 2020
@suryasaha @HsiuKangHuang
1
Change flatfile-to-json.cwl to add_NCBI_annotation_track.cwl
#99 by mpoelchau was closed Aug 20, 2021
@mpoelchau
1
Minor fixes to Create symlink workflow
#98 by mpoelchau was closed Jul 30, 2020
@HsiuKangHuang
3
Create documentation for all workflows
#97 by mpoelchau was closed Apr 10, 2020
@mpoelchau @HsiuKangHuang
1
generate readme files for assemblies and gene predictions
#93 by mpoelchau was closed Mar 24, 2020
@HsiuKangHuang
1
improve createorganism.cwl error handling
#92 by mpoelchau was closed Mar 5, 2020
@HsiuKangHuang
2
discuss workflow for processing NCBI Refseq annotations for chado ingest discussion
#88 by mpoelchau was closed Apr 26, 2022
@mpoelchau
1
Set up production workflow
#87 by mpoelchau was closed Mar 24, 2020
@mpoelchau @HsiuKangHuang
4
trackList.json post-processing steps in flow_apollo2 aren't working bug Something isn't working
#86 by mpoelchau was closed Feb 5, 2020
@HsiuKangHuang
1
ProTip! Exclude everything labeled bug with -label:bug.