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Commits on Dec 29, 2024

• Merge pull request #53 from aofarrel/mega-qc

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Commits on Dec 28, 2024

• Fix existing workflows, rm wrapper_example.wdl

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• Pin version

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• Use new docker image why don't ya

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Commits on Dec 24, 2024

• Testing

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• Pin version, output date

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• Update myco_raw.wdl

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• Add variable prefixes

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Commits on Dec 23, 2024

• QC overhaul for myco_raw

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Commits on Dec 21, 2024

• Merge branch 'main' of https://github.com/aofarrel/myco

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• Update columns

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• Merge pull request #52 from aofarrel/update-dockers-0.12.5.2

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• Fix typo

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• Pin versions, add "tbd_" to outvars, require date

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• Update stuff for newer theiaprofiler

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• Test new Theiagen TBProf

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Commits on Dec 19, 2024

• Fix Silly Typo

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• Revert CRyPTIC docker images

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Commits on Dec 18, 2024

• Actually use new docker

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Commits on Dec 16, 2024

• Create colorful.png

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Commits on Nov 21, 2024

• Update prereqs and dockers

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Commits on Nov 12, 2024

• Add a low-resource mode

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Commits on Aug 22, 2024

• Output decontam reports for myco_raw

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• Update citation

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• Update array-to-TSV task

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• Citations

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Commits on Aug 21, 2024

• Update decontamination report task

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• Pin versions

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Commits on Jul 22, 2024

• Pull test version of pull fastqs for pheonix

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Commits on Jul 17, 2024

• Add fastp/decont report task

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Commits on Jul 3, 2024

• Merge pull request #50 from aofarrel/detect-decimated-samples

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Commits on Jun 28, 2024

• Pin version

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• Try out sranwrp timer

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Commits on Jun 27, 2024

• Pin version

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Commits on Jun 26, 2024

• Switch to main

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