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Pull requests: benjjneb/dada2

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Pull requests list

0.4.2 plot_substitutions DADA-Figure-6
#24 by joey711 was merged Jun 19, 2015 Loading…
S4 migrate
#34 by joey711 was merged Aug 7, 2015 Loading…
3
Add a basic concatPairs function
#37 by zachcp was closed Sep 21, 2015 Loading…
3
Add a concatenation option to the mergePairs function.
#40 by zachcp was merged Sep 25, 2015 Loading…
1
v0.9.7 mergePairsByID add code. Needs testing.
#49 by joey711 was merged Jan 13, 2016 Loading…
1
Deprecated QMAX as a preprocessor defined variable.
#50 by cd-mcfarland was merged Jan 13, 2016 Loading…
Further QMAX fixes and NULL initialization
#51 by benjjneb was merged Jan 13, 2016 Loading…
coerce derepQuals to matrix
#56 by carlopacioni was closed Feb 10, 2016 Loading…
1
Update README.md
#66 by joey711 was merged Apr 21, 2016 Loading…
Fix DADA2 link in SotA.Rmd
#69 by joey711 was merged May 3, 2016 Loading…
Documentation fixes
#129 by gblanchard4 was merged Oct 3, 2016 Loading…
3
Updated .gitignore
#131 by gblanchard4 was merged Oct 6, 2016 Loading…
1
Output Bootstraps for assignTaxonomy
#136 by gblanchard4 was merged Oct 22, 2016 Loading…
5
gh-pages documentation fixes
#137 by gblanchard4 was merged Oct 11, 2016 Loading…
1
Fixed randomization in learnErrors
#181 by gblanchard4 was merged Feb 4, 2017 Loading…
2
LearnErrors able to take derep-class objects now
#184 by gblanchard4 was merged Feb 6, 2017 Loading…
3
Added EOL for cpp files
#188 by gblanchard4 was merged Feb 11, 2017 Loading…
plotQualityProfile Readcounts
#190 by gblanchard4 was merged Feb 11, 2017 Loading…
1
fastqFilters - add percent of remaining reads
#199 by vmikk was merged Feb 27, 2017 Loading…
1
Added per-sample chimera filtering
#222 by fanli-gcb was merged Apr 4, 2017 Loading…
1
Added option for summarized quality profile plots
#231 by fanli-gcb was merged Apr 29, 2017 Loading…
3
Level-up ShortRead package dependency version
#265 by joey711 was merged Jun 20, 2017 Loading…
3
Handle mclapply under Windows
#281 by fanli-gcb was merged Jul 11, 2017 Loading…
2
Rscript --vanilla
#418 by kiwiroy was closed Feb 21, 2018 Loading…
1
mergeSequenceTables accepts a vector of files/sequence tables
#440 by fanli-gcb was merged Apr 15, 2018 Loading…
1
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