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Commits on Jan 23, 2019

• Merge pull request scverse#442 from ivirshup/easier_10x_reading

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• changed role name from version to noteversion

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• added tom to release notes, prettifed version

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• Set lower bound on pytest version

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• Improved error message for genome ambiguity in legacy 10x h5 files

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• Added test for error when reading legacy 10x h5 files

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• fixed bug in paga plotting after reducing resolution

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• Merge pull request scverse#439 from tomwhite/generalize-distributed

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• Merge pull request scverse#441 from gokceneraslan/patch-11

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Commits on Jan 22, 2019

• Consistent hint for the distance matrix

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• Don't leave file open

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• No longer require genome field for read_10x_h5

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  ivirshup

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• Use newest scanpydoc to fix GH links pt2

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• Use np.asarray() rather than Zappy-specific code.

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• Use newest scanpydoc to fix GH links

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Commits on Jan 21, 2019

• Removed the combat extra

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• added patsy to the default deps

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• Merge pull request scverse#424 from ivirshup/qcmetrics_fix

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• updated pbmc3k data docstring

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• Merge pull request scverse#430 from ivirshup/scatter_symbols

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• fixed pca_loadings

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• added note about score definition

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Commits on Jan 18, 2019

• allow setting the fontsize in set_figure_params

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Commits on Jan 16, 2019

• add py 3.7 classifier

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Commits on Jan 15, 2019

• Added test for scatter plots with gene_symbols

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• Added gene_symbols option to scatter plots

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• Remove redundant code

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• fix docstring neighbors (scverse#427)

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Commits on Jan 14, 2019

• Bugfix for percent_top argument of calculate_qc_metrics

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• Further doc updates

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• Stability updates to calculate_qc_metrics

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• Expand docs for calculate_qc_metrics

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• Added check on bounds for cumulative proportion calculation

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• Fix calculate_qc_metrics errors on no percent_top

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Commits on Jan 11, 2019

• Merge pull request scverse#423 from gokceneraslan/patch-10

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