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Commits on Jan 27, 2025

• add better debugging

  mashehu

  committed
  2f9db79

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• Update actions/setup-node digest to 1d0ff46 (#7371)

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  renovate[bot]

  authored
  27978ac

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Commits on Jan 21, 2025

• fix filter value for nf-test dry-run (#7340)

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  mashehu

  authored
  c0e2936

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• Update GitHub Actions (#7339)

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  renovate[bot]

  authored
  a7de37f

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Commits on Jan 20, 2025

• Dynamic sharding (#7284)

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  mashehu

  and

  maxulysse

  authored
  a04038f

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Commits on Jan 17, 2025

• Bump rundeepvariant and vcfstatsreport (#7301)

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  fellen31

  authored
  e9b59c8

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Commits on Jan 15, 2025

• run CI on github runners until self-hosted issues are solved 😢 (#7311)

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  mirpedrol

  authored
  1085d44

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Commits on Jan 13, 2025

• Update actions/upload-artifact digest to 65c4c4a (#7293)

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  renovate[bot]

  authored
  a5b9b81

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Commits on Jan 10, 2025

• fix linting of template directory (#7287)

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  LeonHafner

  and

  mashehu

  authored
  76684e8

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• Fix linting CI treating README files as modules (#7285)

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  fellen31

  authored
  5d3d5f2

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Commits on Jan 9, 2025

• Add filter step to CI to exclude some tests for some profiles (#7273)

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  mashehu

  authored
  667f74c

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• differentiate between different confirm-pass actions (#7279)

  mashehu

  authored
  4c741e5

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Commits on Jan 7, 2025

• Update GitHub Actions (#7239)

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  renovate[bot]

  authored
  cb8e4c9

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Commits on Dec 16, 2024

• port parabricks/mutectcaller to nf-test (#6991)

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  famosab

  and

  SPPearce

  authored
  e690c28

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Commits on Dec 13, 2024

• Fix conda pytests cf #7215 (#7219)

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  maxulysse

  authored
  99ea33b

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• use detailed profiles in tests/nf-test.config (#7207)

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  sateeshperi

  authored
  0810805

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Commits on Dec 11, 2024

• update parabricks/applybqsr (#7189)

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  famosab

  authored
  4912a73

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• Port parabricks/dbsnp to nf-test (#6977)

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  famosab

  and

  nf-core-bot

  authored
  356e5e6

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• port parabricks/indexgvcf to nf-test (#6996)

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  famosab

  and

  mashehu

  authored
  a62c798

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Commits on Dec 10, 2024

• Fix ci confirm pass (#7186)

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  sateeshperi

  authored
  2edb630

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• Update GitHub Actions (#7126)

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  renovate[bot]

  authored
  8aef0e0

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• port parabricks/genotypegvcf to nf-test (#6980)

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  3 peopleauthored
  51145aa

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Commits on Nov 30, 2024

• Fastq align dedup bwameth (#7007)

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  3 peopleauthored
  bd5f75c

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Commits on Nov 28, 2024

• Add compressed output support for GAWK (#7105)

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  LouisLeNezet

  and

  LouisLeNezet

  authored
  caab131

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Commits on Nov 27, 2024

• Add mafft guidetree (#7097)

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  luisas

  and

  mashehu

  authored
  868cb0d

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Commits on Nov 25, 2024

• ci: Just lint all the subworkflows (#7084)

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  edmundmiller

  authored
  f1236ca

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• Fix modules linting issue in GA (#7079)

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  LouisLeNezet

  authored
  2db8d8f

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Commits on Nov 22, 2024

• Fix CI modules lint (#7056)

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  mirpedrol

  authored
  d5d0870

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• Update detect-nf-test-changes which includes tag filtering and multi-line include statements (#7065)

  adamrtalbot

  authored
  e3859db

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Commits on Nov 21, 2024

• remove test directories from module_names output (#7047)

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  mashehu

  authored
  ffd452a

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• chore(deps): update condaforge/mambaforge docker tag to v24.9.2 (#5561)

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  renovate[bot]

  and

  edmundmiller

  authored
  18e5832

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• chore(deps): update github actions (#7020)

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  renovate[bot]

  authored
  a39eca1

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• ci: Fix linting getting skipped (#7043)

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  edmundmiller

  and

  adamrtalbot

  authored
  ece675b

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Commits on Nov 20, 2024

• Remove Wave Dockerfile Singularity builds (#7042)

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  edmundmiller

  authored
  3ceae3a

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• build: Use quay.io/nf-core/ubuntu to avoid Dockerhub limits

  edmundmiller

  committed
  a0e49eb

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