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Commits on Mar 28, 2022

• Merge branch 'Ensembl:dev/hive_master' into dev/hive_master

  sgiorgetti

  authored
  2de8989

Commits on Feb 28, 2022

• Merge pull request Ensembl#268 from Ensembl/copyright-2022

  Show description for 41c1d36
  ens-ftricomi

  authored
  41c1d36

• Merge pull request Ensembl#269 from Ensembl/hotfix/update_travis_branches

  Show description for 04052f6
  ens-ftricomi

  authored
  04052f6

• update master -> main for some repos in .travis.yml

  

  Leanne Haggerty

  committed
  3de11b2

• Yearly copyright update

  

  Leanne Haggerty

  committed
  476e2b3

Commits on Jan 19, 2022

• Merge branch 'Ensembl:dev/hive_master' into dev/hive_master

  sgiorgetti

  authored
  9972492

Commits on Jan 7, 2022

• Merge pull request Ensembl#263 from Ensembl/ensembl-taxonomy-default

  Show description for 4e6191a
  thibauthourlier

  authored
  4e6191a

• Rollback to standard clone for unknown repos.

  marcoooo

  committed
  355e723

• Updated git clone to use ensembl-git-tools instead to enable fallback branch to main

  marcoooo

  committed
  31e7a07

Commits on Dec 10, 2021

• Merge branch 'Ensembl:dev/hive_master' into dev/hive_master

  sgiorgetti

  authored
  e43a618

Commits on Oct 21, 2021

• Merge pull request Ensembl#255 from Ensembl/hotfix/bam_description_updated

  Show description for 1e55a0c
  williamstark01

  authored
  1e55a0c

• Update add_rnaseq_analysis_descriptions.pl

  Show description for 8403952
  ens-carlos

  authored
  8403952

Commits on Oct 14, 2021

• Added stable_id_mapping script and changed defaults for herring

  

  Stefano Giorgetti

  committed
  cd67bed

Commits on Oct 8, 2021

• Changed defaults to herring

  

  Stefano Giorgetti

  committed
  18e930e

Commits on Sep 9, 2021

• Updated forked repo

  Show description for 8f6a47e
  

  Stefano Giorgetti

  committed
  8f6a47e

• Merge branch 'Ensembl:dev/hive_master' into dev/hive_master

  sgiorgetti

  authored
  ef7b710

Commits on Sep 8, 2021

• Merge pull request Ensembl#253 from Ensembl/bugfix/queue_renamed

  Show description for d00f889
  jamie-m-a

  authored
  d00f889

• Updated production queue name for the new cluster in Genome_annotation_conf.pm

  ens-carlos

  authored
  7f77790

Commits on Sep 7, 2021

• Tweaked default hive_capacity and analysis_capacity limits

  

  Stefano Giorgetti

  committed
  32e8b58

• Fix - Default limit for workers

  

  Stefano Giorgetti

  committed
  9983bf1

• Fix - hive_capacity limit for sub-pipeline

  

  Stefano Giorgetti

  committed
  c7e9ccf

Commits on Sep 6, 2021

• Merge pull request #1 from sgiorgetti/experimental/sgiorgetti

  Show description for 1d70261
  sgiorgetti

  authored
  1d70261

Commits on Sep 2, 2021

• Merge pull request Ensembl#250 from Ensembl/bugfix/lastz_paths

  Show description for 126cebf
  thibauthourlier

  authored
  126cebf

Commits on Sep 1, 2021

• Merge pull request Ensembl#252 from Ensembl/bugfix/seleno_biotypes

  Show description for 422ecb8
  thibauthourlier

  authored
  422ecb8

• Fixed some more indentation for fish and aves.

  ens-carlos

  authored
  ed01945

• Fixed some indentation for aves.

  ens-carlos

  authored
  4be3b61

• Added all seleno biotypes where there was seleno_self already in GenebuilderStatic.pm

  ens-carlos

  authored
  b51c4f7

• Added all seleno biotypes where there was seleno_self already in LayerAnnotationStatic.

  ens-carlos

  authored
  4cc1305

Commits on Aug 31, 2021

• Amended EnsemblCore2Otter and UniProt_BLAST_genome pipelines to work on Codon cluster

  Show description for f45968d
  

  Stefano Giorgetti

  committed
  f45968d

Commits on Aug 18, 2021

• Removed cellar_dir and use binary_base for lastz paths.

  ens-carlos

  authored
  3c2ff97

• Updated paths to lastz executables so they work in the new cluster.

  ens-carlos

  authored
  58cac97

Commits on Aug 1, 2021

• Merge pull request Ensembl#249 from Ensembl/feature/scallop_donors

  Show description for af40ce1
  ndliberial

  authored
  af40ce1

Commits on Jul 29, 2021

• HiveUTRAddition, added _star_rs_layer_ regexp so the rnaseq models from the scallop pipeline are used as rnaseq_donor.

  ens-carlos

  authored
  b1f66e3

Commits on Jul 27, 2021

• Merge pull request Ensembl#247 from Ensembl/hotfix/file_search_update_cmd

  Show description for b08351d
  ens-ftricomi

  authored
  b08351d

Commits on Jul 23, 2021

• remove lfs from command to search for file

  ndliberial

  committed
  4be1570

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