-
Notifications
You must be signed in to change notification settings - Fork 734
Insights: nf-core/modules
November 13, 2024 – December 13, 2024
Overview
Could not load contribution data
Please try again later
145 Pull requests merged by 53 people
-
Replace ubuntu for all modules using it - meta PR
#7215 merged
Dec 13, 2024 -
Fix conda pytests cf #7215
#7219 merged
Dec 13, 2024 -
fix vcf2db: add missing dependencies
#7217 merged
Dec 13, 2024 -
Changed paths of files used in main.nf.test from test-data/methylseq …
#7212 merged
Dec 13, 2024 -
Update nf-test.config
#7214 merged
Dec 13, 2024 -
rm test resourceLimits
#7213 merged
Dec 13, 2024 -
use detailed profiles in tests/nf-test.config
#7207 merged
Dec 13, 2024 -
Fix subworkflow imports for bam_dedup_umi
#7209 merged
Dec 12, 2024 -
Generic UMI handling subworkflow
#7208 merged
Dec 12, 2024 -
Make busco/busco
seq_diroutput optional#7203 merged
Dec 12, 2024 -
Update BUSCO module
#7199 merged
Dec 11, 2024 -
Update ampcombi 2.0.1
#7142 merged
Dec 11, 2024 -
Facilitate iteration in differential subworkflow
#7115 merged
Dec 11, 2024 -
Correct non-gzipped output from clustalo/align
#7197 merged
Dec 11, 2024 -
update module propr/grea
#7198 merged
Dec 11, 2024 -
update parabricks/applybqsr
#7189 merged
Dec 11, 2024 -
Modify DAS_Tool input structure, bump version, switch to nf-test
#7163 merged
Dec 11, 2024 -
Port
parabricks/dbsnpto nf-test#6977 merged
Dec 11, 2024 -
port parabricks/indexgvcf to nf-test
#6996 merged
Dec 11, 2024 -
METABAT2_METABAT2: Add nf-test and stub
#7196 merged
Dec 11, 2024 -
new module pangolin/updatedata & patch pangolin/run
#7182 merged
Dec 10, 2024 -
bump ngsbits
#7193 merged
Dec 10, 2024 -
Fix ci confirm pass
#7186 merged
Dec 10, 2024 -
MEGAHIT: fix single-end input
#7190 merged
Dec 10, 2024 -
Add foldmason msa2lddtreport
#7191 merged
Dec 10, 2024 -
add stub test for samtools/mpileup
#7192 merged
Dec 10, 2024 -
Update: deseq2/differential for upcoming improved standardisation of template modules
#7178 merged
Dec 10, 2024 -
Add foldmason createdb
#7180 merged
Dec 10, 2024 -
Update GitHub Actions
#7126 merged
Dec 10, 2024 -
port parabricks/genotypegvcf to nf-test
#6980 merged
Dec 10, 2024 -
add TCOFFEE/EXTRACTFROMPDB
#7167 merged
Dec 9, 2024 -
Add pigz to trimgalore
#7169 merged
Dec 6, 2024 -
mmseqs version bump - cluster (+tests ported to nf-test), createdb, createtsv, databases, linclust
#7170 merged
Dec 6, 2024 -
Replace switch with else-if in utils_nfcore_pipeline
#7168 merged
Dec 6, 2024 -
Add args2 to samtools view inside pretextmap
#7162 merged
Dec 5, 2024 -
fix read variable in for loop
#6921 merged
Dec 5, 2024 -
Pyrodigal - add --jobs flag for multi-threaded operation, bump version
#7116 merged
Dec 5, 2024 -
Add input gt foldmason
#7155 merged
Dec 4, 2024 -
SHAPEIT5_PHASERAREMigrate to nf-test#7151 merged
Dec 4, 2024 -
SHAPEIT5_SWITCHMigrate to nf-test#7066 merged
Dec 4, 2024 -
add new module vt/decompose_blocksub
#7139 merged
Dec 4, 2024 -
SHAPEIT5_LIGATEMigration to nf-test#7060 merged
Dec 4, 2024 -
Change GLIMPSE2_concordance non mandatory values
#7146 merged
Dec 4, 2024 -
Cellbender empty droplet removal
#7031 merged
Dec 3, 2024 -
New module: COPTR/ESTIMATE
#7149 merged
Dec 3, 2024 -
Increase default resource allocation for Ribotracer prepareorfs
#7145 merged
Dec 3, 2024 -
Convert exception obj to string
#7148 merged
Dec 3, 2024 -
SHAPEIT5_PHASECOMMONMigrate to nf-test#7061 merged
Dec 3, 2024 -
Minor refactor on attachMultiqcReport function.
#7129 merged
Dec 3, 2024 -
Minor fixes to linting in prepro
#7144 merged
Dec 3, 2024 -
New module: COPTR/EXTRACT
#7089 merged
Dec 3, 2024 -
Add clustalo as aligner to fasta_newick_epang_gappa swf
#7099 merged
Dec 3, 2024 -
Add module
muse/sump#5629 merged
Dec 2, 2024 -
Switch featureCounts to TSV
#7136 merged
Dec 2, 2024 -
Fix bug in
RRNATRANSCRIPTSwith harcoded gtf#7141 merged
Dec 2, 2024 -
Lint fastqs before and during preprocessing
#7123 merged
Dec 2, 2024 -
new module plink genome
#7112 merged
Dec 2, 2024 -
checkm/qa: Improve input validation
#7119 merged
Dec 1, 2024 -
use just MemoryUnit as per language server reco
#7127 merged
Nov 30, 2024 -
Fastq align dedup bwameth
#7007 merged
Nov 30, 2024 -
Add name to SYLPH_SKETCH module tests
#7122 merged
Nov 29, 2024 -
fix linting on meta.yml files
#7121 merged
Nov 29, 2024 -
Remove unused code from utils_nfcore_pipeline swf
#7094 merged
Nov 29, 2024 -
Add module
muse/call#5630 merged
Nov 29, 2024 -
UMICollapse module: Drop external dependencies from UMICollapse module tests
#7075 merged
Nov 29, 2024 -
New Module: NACHO_QC
#7108 merged
Nov 29, 2024 -
New Module: NACHO_NORMALISE
#7100 merged
Nov 29, 2024 -
update module propr/propd
#7083 merged
Nov 28, 2024 -
spaceranger_bump_version
#7088 merged
Nov 28, 2024 -
Add compressed output support for
GAWK#7105 merged
Nov 28, 2024 -
Attempt at fixing samshee module with latest release
#7117 merged
Nov 28, 2024 -
Update hifiasm
#7114 merged
Nov 28, 2024 -
Add sylph sketch
#7078 merged
Nov 28, 2024 -
adding mgikit module
#7008 merged
Nov 28, 2024 -
Add module gzrt (#6918)
#7052 merged
Nov 28, 2024 -
Update trinity version
#7109 merged
Nov 28, 2024 -
Fix prettier mafft
#7110 merged
Nov 28, 2024 -
fix versions of mafft/guidetree
#7104 merged
Nov 27, 2024 -
Add mafft guidetree
#7097 merged
Nov 27, 2024 -
update malt/build module
#6994 merged
Nov 27, 2024 -
Fasta index bismark bwameth
#7010 merged
Nov 27, 2024 -
Added subworkflow fasta_gxf_busco_plot
#7051 merged
Nov 26, 2024 -
Bump GUNC and add gunc/run test
#6920 merged
Nov 26, 2024 -
Added four file params to clustalo/align
#7093 merged
Nov 26, 2024 -
Pydamage change output file name
#7095 merged
Nov 26, 2024 -
BCFTOOLS_CONVERTMigration to nf-test#7049 merged
Nov 26, 2024 -
Fix input tree in CLUSTALO/ALIGN
#7092 merged
Nov 26, 2024 -
Fix tcoffee alncompare
#7048 merged
Nov 26, 2024 -
bismark/align - use more descriptive variable names than it in test
#7035 merged
Nov 26, 2024 -
remove soft-linking of fasta instead stage in dir
#7081 merged
Nov 26, 2024 -
New module: COPTR/MERGE
#7062 merged
Nov 25, 2024 -
ci: Just lint all the subworkflows
#7084 merged
Nov 25, 2024 -
homer groseq update
#7073 merged
Nov 25, 2024 -
Fix output channel of TCOFFEE/CONSENSUS
#7082 merged
Nov 25, 2024 -
trgt/merge: Made extension of stub test configurable
#7080 merged
Nov 25, 2024 -
Fix modules linting issue in GA
#7079 merged
Nov 25, 2024 -
update datavrzd containers
#7077 merged
Nov 25, 2024 -
FastQC: Avoid NXF langserver warning
#7069 merged
Nov 24, 2024 -
Utils Nextflow: Avoid unused variables
#7070 merged
Nov 24, 2024 -
nf-core utils: fix langserver warnings
#7071 merged
Nov 24, 2024 -
Remove lone nextflow.config in
NEXTCLADE_RUNold pytest#7067 merged
Nov 24, 2024 -
bump regtools version
#7050 merged
Nov 22, 2024 -
Fix CI modules lint
#7056 merged
Nov 22, 2024 -
fix: quartonotebook imported over multiple lines which broke detect-nf-test-changes
#7063 merged
Nov 22, 2024 -
Update detect-nf-test-changes which includes tag filtering and multi-line include statements
#7065 merged
Nov 22, 2024 -
use prefix for pilon ouput
#7055 merged
Nov 22, 2024 -
Update nonpareil/curve: png is optional
#7054 merged
Nov 22, 2024 -
Add SKA/FASTA module
#7040 merged
Nov 21, 2024 -
update bcftools pluginsplit
#7013 merged
Nov 21, 2024 -
remove test directories from module_names output
#7047 merged
Nov 21, 2024 -
Fix language server errors
#7026 merged
Nov 21, 2024 -
chore(deps): update condaforge/mambaforge docker tag to v24.9.2
#5561 merged
Nov 21, 2024 -
chore(deps): update github actions
#7020 merged
Nov 21, 2024 -
ci: Fix linting getting skipped
#7043 merged
Nov 21, 2024 -
New module: regtools junction extract
#7033 merged
Nov 20, 2024 -
Remove Wave Dockerfile Singularity builds
#7042 merged
Nov 20, 2024 -
Add coptr module
#6935 merged
Nov 20, 2024 -
Migrate umitools/group to nf-test
#6653 merged
Nov 20, 2024 -
Purge CI workspace before running using GPU
#7039 merged
Nov 20, 2024 -
Swap verifybamid2 to nf-test
#6824 merged
Nov 20, 2024 -
fix special characters in samtools/view container
#7036 merged
Nov 20, 2024 -
Purge the workspace for the self-hosted runners
#7037 merged
Nov 20, 2024 -
Add gpu tag filter
#7024 merged
Nov 20, 2024 -
Fix Renovate CI versions
#7027 merged
Nov 19, 2024 -
bump ALL gatk4 modules
#6917 merged
Nov 19, 2024 -
migrate vcf2db to wave
#7022 merged
Nov 19, 2024 -
Bump Nextflow Versions
#7019 merged
Nov 19, 2024 -
Use new nf-test features
#6286 merged
Nov 18, 2024 -
improve workflow logic for
fastq_align_dedup_bismark#7005 merged
Nov 18, 2024 -
Added module trgt/plot
#7003 merged
Nov 18, 2024 -
Added module trgt/merge
#7012 merged
Nov 18, 2024 -
chore(deps): pin dependencies
#7004 merged
Nov 16, 2024 -
Fastq align dedup bismark
#6998 merged
Nov 16, 2024 -
Added module trgt/genotype
#7002 merged
Nov 16, 2024 -
Add GPU-based tests
#6953 merged
Nov 16, 2024 -
chore(deps): update dotnet monorepo to v9 (major)
#5846 merged
Nov 15, 2024 -
parabricks/applybqsr version updated and tests migrated to nf-test
#6881 merged
Nov 15, 2024 -
nf-test for ashlar
#6931 merged
Nov 14, 2024 -
Wave with Dockerfiles
#4940 merged
Nov 14, 2024 -
clipkit - new module
#6993 merged
Nov 14, 2024 -
Fix/biscuit apps
#6979 merged
Nov 14, 2024 -
hmmalign ported to nf-test, version bump, wave container, standard ou…
#6992 merged
Nov 14, 2024 -
Add FCSGX_CLEANGENOME
#6975 merged
Nov 14, 2024 -
Update GANON/BUILDCUSTOM (fix support for alternative input type)
#6982 merged
Nov 14, 2024 -
temporarely switch github runners
#6989 merged
Nov 14, 2024
56 Pull requests opened by 25 people
-
Update busco_busco config and windowmasker_convert config
#6990 opened
Nov 14, 2024 -
port parabricks/mutectcaller to nf-test
#6991 opened
Nov 14, 2024 -
port parabricks/deepvariant to nf-test
#6995 opened
Nov 14, 2024 -
build: Add environment.yml for doubletdetection
#6997 opened
Nov 14, 2024 -
Port sentieon bwaindex to nf-test
#6999 opened
Nov 15, 2024 -
build: Add nf-co2footprint to CI runs
#7029 opened
Nov 19, 2024 -
PoC: Use Fusion for test workdir
#7030 opened
Nov 19, 2024 -
Update bclconvert
#7034 opened
Nov 20, 2024 -
Update bowtie2 align test
#7038 opened
Nov 20, 2024 -
Include sizes in samtools faidx
#7041 opened
Nov 20, 2024 -
Add Test Report
#7053 opened
Nov 22, 2024 -
Change Samtools/view to use same container as all other samtools modules
#7058 opened
Nov 22, 2024 -
Add sam2lca/updadb module
#7059 opened
Nov 22, 2024 -
Update decoupler
#7068 opened
Nov 22, 2024 -
Updated the meta.yml of subworkflows
#7072 opened
Nov 23, 2024 -
style: Sort environment.yml dependencies
#7085 opened
Nov 25, 2024 -
Add pre-commit hook to validate environment.ymls
#7086 opened
Nov 25, 2024 -
style: Add hadolint hook for Dockerfiles
#7087 opened
Nov 25, 2024 -
Add Renovate env comment linting
#7090 opened
Nov 25, 2024 -
Check for new version snapshotting
#7098 opened
Nov 26, 2024 -
ci: Let wave fail
#7101 opened
Nov 26, 2024 -
Sarek wave ARM test
#7102 opened
Nov 26, 2024 -
ci: Update module_name filter step
#7106 opened
Nov 27, 2024 -
Add sylph/profile module
#7118 opened
Nov 28, 2024 -
Update main.nf
#7120 opened
Nov 29, 2024 -
Update biocontainers/abritamr Docker tag to v1.0.19
#7130 opened
Dec 1, 2024 -
Update biocontainers/agat Docker tag to v1.4.2
#7131 opened
Dec 1, 2024 -
Update biocontainers/bowtie2 Docker tag to v2.5.3
#7132 opened
Dec 1, 2024 -
Update biocontainers/checkv Docker tag to v1.0.3
#7133 opened
Dec 1, 2024 -
Update biocontainers/chewbbaca Docker tag to v3.3.10
#7134 opened
Dec 1, 2024 -
Update biocontainers/chromap Docker tag to v0.2.7
#7135 opened
Dec 1, 2024 -
Fix nf-test workflow triggers
#7137 opened
Dec 2, 2024 -
Add HOMER Uniqmap tests
#7143 opened
Dec 3, 2024 -
[WIP] Cellranger v9 modules
#7153 opened
Dec 4, 2024 -
Proovframe update
#7158 opened
Dec 4, 2024 -
Fix stub run trimmomatic
#7160 opened
Dec 4, 2024 -
Bcl2fastq bump
#7161 opened
Dec 4, 2024 -
Update DeepVariant
#7171 opened
Dec 6, 2024 -
Limit Trimgalore to 15 cpus
#7173 opened
Dec 6, 2024 -
Fix cellranger multi handling of crispr data
#7175 opened
Dec 6, 2024 -
Fix abritamr/run
#7176 opened
Dec 7, 2024 -
Fix minor typos
#7177 opened
Dec 8, 2024 -
Add wipertools module (#7184)
#7185 opened
Dec 9, 2024 -
bump star build
#7194 opened
Dec 10, 2024 -
Add nftests custom modules
#7201 opened
Dec 11, 2024 -
Update vcf2maf and add stub tests
#7202 opened
Dec 11, 2024 -
Update CENTRIFUGE: bump versions, fix missing args, and command formatting
#7205 opened
Dec 12, 2024 -
Update file naming strategy
#7206 opened
Dec 12, 2024 -
Add busco downloads as output
#7210 opened
Dec 12, 2024 -
Remove `compressed` flag from all mmseqs modules
#7211 opened
Dec 12, 2024 -
DUMMY DELETE ME: Test if UNTAR fails on self_hosted runners
#7216 opened
Dec 13, 2024 -
Add module custom_tabulargseatochip
#7218 opened
Dec 13, 2024 -
Add propd to abundance_differential_filter subworkflow
#7220 opened
Dec 13, 2024 -
split out gunzip from #7215
#7221 opened
Dec 13, 2024 -
Split untar out from #7215
#7222 opened
Dec 13, 2024 -
Move Changes action locally
#7223 opened
Dec 13, 2024
28 Issues closed by 14 people
-
[FEATURE] Centralize all modules using ubuntu container into a single container
#5968 closed
Dec 13, 2024 -
Environment.ymls using seqera containers fail linting
#5813 closed
Dec 11, 2024 -
Update GREA
#7195 closed
Dec 11, 2024 -
new module: foldmason/msa2lddtreport
#7181 closed
Dec 10, 2024 -
new module: foldmason/createdb
#7179 closed
Dec 10, 2024 -
new module: tcoffee/extractfrompdb
#7166 closed
Dec 9, 2024 -
update module: foldmason/easymsa
#7154 closed
Dec 4, 2024 -
new module: vt/decompose_blocksub
#7138 closed
Dec 4, 2024 -
new module:plink/genome
#7111 closed
Dec 2, 2024 -
new subworkflow: fastq_align_dedup_bwameth
#6973 closed
Nov 30, 2024 -
new module: MuSE
#5621 closed
Nov 29, 2024 -
new module: mgikit/demultiplex
#5969 closed
Nov 28, 2024 -
new module: gzrt aka gzrecover
#6918 closed
Nov 28, 2024 -
new module: MAFFT/GUIDETREE
#7096 closed
Nov 27, 2024 -
new subworkflow: fasta_create_index_bismark_bwameth
#7009 closed
Nov 27, 2024 -
new subworkflow: FASTA_GXF_BUSCO_PLOT
#5584 closed
Nov 26, 2024 -
[FEATURE] clustalo/align doesn't support profile alignment
#7091 closed
Nov 26, 2024 -
Update current subworkflows tests
#2179 closed
Nov 25, 2024 -
new subworkflow: FASTQ_BWA_MEM_SAMBLASTER
#4909 closed
Nov 24, 2024 -
new module: Hiphase
#6856 closed
Nov 21, 2024 -
gffread nucleotide to protein
#4152 closed
Nov 20, 2024 -
new module:regtools
#7032 closed
Nov 20, 2024 -
Caused by: java.nio.channels.OverlappingFileLockException
#6664 closed
Nov 18, 2024 -
new subworkflow: fastq_align_dedup_bismark
#6972 closed
Nov 16, 2024 -
new module: TRGT
#6984 closed
Nov 16, 2024 -
update module: parabricks/applybqsr
#6861 closed
Nov 15, 2024 -
ASHLAR testing with nf-test
#6895 closed
Nov 14, 2024
23 Issues opened by 18 people
-
new module: VueGen
#7204 opened
Dec 12, 2024 -
Add `TABULAR_TO_GSEA_CHIP` to nf-core/modules
#7200 opened
Dec 11, 2024 -
new module: AGAT/SPFILTERBYORFSIZE
#7187 opened
Dec 10, 2024 -
new module: WIPERTOOLS
#7184 opened
Dec 9, 2024 -
bbmap/bbduk sometimes fails to create the versions.yml file
#7183 opened
Dec 9, 2024 -
cellranger multi with gene expression and CRISPR data fails to process CRISPR data
#7174 opened
Dec 6, 2024 -
new module: Portcullis
#7172 opened
Dec 6, 2024 -
new module: PALOM
#7165 opened
Dec 5, 2024 -
Having multiple tools with version breaks pipeline (`muse/sump`)
#7164 opened
Dec 5, 2024 -
spotiflow not tagged as an "image" module
#7159 opened
Dec 4, 2024 -
new module: CAREamics
#7157 opened
Dec 4, 2024 -
new module: INSTANSEG
#7152 opened
Dec 4, 2024 -
What is the meaning "seed" value in module STITCH?
#7150 opened
Dec 4, 2024 -
CI: nf-test shard jobs to have test/tag names
#7128 opened
Nov 30, 2024 -
new module: MDUST
#7076 opened
Nov 25, 2024 -
new module: CTAT/SPLICING
#7057 opened
Nov 22, 2024 -
[FEATURE] move nf-test tests from gatk4/asereadcounter in a tests folder
#7046 opened
Nov 21, 2024 -
Remove `params.hisat2_build_memory` from `hisat2/build`
#7045 opened
Nov 21, 2024 -
Address limitations of using nf-test sharding
#7018 opened
Nov 18, 2024 -
Create conda-fail.yml on Conda CI failures
#7017 opened
Nov 18, 2024 -
Handle GitHub runners possibly running out of space
#7016 opened
Nov 18, 2024 -
update module: Dragonflye to v1.2.1
#7015 opened
Nov 18, 2024 -
Update quartonotebook to use wave when conda support comes
#7006 opened
Nov 16, 2024
45 Unresolved conversations
Sometimes conversations happen on old items that aren’t yet closed. Here is a list of all the Issues and Pull Requests with unresolved conversations.
-
Parabricks haplotypecaller version update and tests migrated to nf-test
#6976 commented on
Dec 10, 2024 • 24 new comments -
Add PASTA
#6095 commented on
Dec 10, 2024 • 17 new comments -
pypgx/runngspipeline
#6823 commented on
Dec 5, 2024 • 9 new comments -
add module for btyper3
#3817 commented on
Dec 10, 2024 • 7 new comments -
Add nanoqc module
#6969 commented on
Nov 20, 2024 • 5 new comments -
Add Seurat/MULTI-seq
#6168 commented on
Dec 9, 2024 • 4 new comments -
Add missing file input to bcftools/annotate
#6942 commented on
Dec 10, 2024 • 3 new comments -
Shigapass
#6636 commented on
Nov 28, 2024 • 3 new comments -
Align parabricks subworkflow
#6876 commented on
Dec 2, 2024 • 2 new comments -
Update toulligqc to 2.7.1
#6786 commented on
Dec 10, 2024 • 1 new comment -
update bowtie2 v2.5.4
#6870 commented on
Dec 11, 2024 • 1 new comment -
DON'T MERGE: Bump sortmerna
#6814 commented on
Dec 13, 2024 • 0 new comments -
Fixed linked site location for bbam tools
#6768 commented on
Dec 11, 2024 • 0 new comments -
Script to fetch unique conda environments
#6659 commented on
Dec 11, 2024 • 0 new comments -
Change sed regex for version reporting in pigz modules
#6878 commented on
Nov 26, 2024 • 0 new comments -
add crabs/dbimport from readsimulator pipeline
#6584 commented on
Nov 20, 2024 • 0 new comments -
add crabs/insilicopcr module from readsimulator
#6583 commented on
Nov 20, 2024 • 0 new comments -
Add stimulus transform
#6886 commented on
Dec 13, 2024 • 0 new comments -
Remove langage server warnings
#6937 commented on
Dec 13, 2024 • 0 new comments -
Add dshbio/fastatoparquet module
#5994 commented on
Dec 11, 2024 • 0 new comments -
remove renovate-config-validator updates
#5737 commented on
Dec 13, 2024 • 0 new comments -
New module: hostile/clean
#6966 commented on
Nov 21, 2024 • 0 new comments -
Added a draft for fasta_ltrretriever_lai
#4984 commented on
Dec 1, 2024 • 0 new comments -
Request to Update Unicycler Version to 0.5.1
#6838 commented on
Nov 18, 2024 • 0 new comments -
nf-test (modules/nf-core/decoupler/decoupler, conda) is broken
#6134 commented on
Nov 22, 2024 • 0 new comments -
Update the `meta.yml` of subworkflows
#6737 commented on
Nov 23, 2024 • 0 new comments -
New module: dorado
#6866 commented on
Dec 2, 2024 • 0 new comments -
update nf-core module: MYGENE
#6835 commented on
Dec 2, 2024 • 0 new comments -
new module: PRP-Meta
#6789 commented on
Dec 2, 2024 • 0 new comments -
Snapshot content of version files instead of a hash
#6505 commented on
Dec 6, 2024 • 0 new comments -
Improve module specific resource requests
#6629 commented on
Dec 6, 2024 • 0 new comments -
new module: Baysor
#5125 commented on
Dec 10, 2024 • 0 new comments -
pip field in environment.yml fails linting
#5814 commented on
Dec 11, 2024 • 0 new comments -
[FEATURE] Build automation for fetching Seqera Containers
#6694 commented on
Dec 11, 2024 • 0 new comments -
Migrate modules to Seqera Containers
#5832 commented on
Dec 11, 2024 • 0 new comments -
Renovate Workflow
#4306 commented on
Dec 11, 2024 • 0 new comments -
Use of OCI Containers
#4519 commented on
Dec 11, 2024 • 0 new comments -
Bulk update modules to use Seqera Containers
#6698 commented on
Dec 11, 2024 • 0 new comments -
Add renovate comments to environment.yml
#6504 commented on
Dec 11, 2024 • 0 new comments -
Use Conda lock files
#5835 commented on
Dec 11, 2024 • 0 new comments -
new module: Phylophlan
#959 commented on
Dec 11, 2024 • 0 new comments -
Renovate Dashboard 🤖
#4211 commented on
Dec 13, 2024 • 0 new comments -
Subworkflow - PON creation - Handle intervals + refactor
#3675 commented on
Dec 13, 2024 • 0 new comments -
Add nf-test for fastq_trim_fastp_fastqc subworkflow
#3809 commented on
Dec 13, 2024 • 0 new comments -
Update mageck modules
#4358 commented on
Dec 11, 2024 • 0 new comments