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Issues list

np.unicode_ was removed in the NumPy 2.0 release
#213 by sgsutcliffe was closed Dec 16, 2024
2
Add to GRDI-AMR.com
#211 by chapb was closed Jul 3, 2024
2
Adding more databases
#209 by joao1980 was closed Jul 8, 2024
1
conda install gets an old version which does not run well
#205 by splaisan was closed Nov 9, 2023
4
docker image v0.8.0 does not accept --user
#204 by splaisan was closed Nov 8, 2023
3
Add PointFinder "Required_mut" column to pointfinder.tsv results
#195 by apetkau was closed Aug 18, 2023
@emarinier
1
Update StarAMR documentation
#191 by apetkau was closed Aug 23, 2023
@emarinier
1
Update Plasmidfinder DB
#188 by emarinier was closed Aug 21, 2023
@emarinier
1
an unexpected keyword argument "inplace" and can't out the "results.xlxs"
#184 by Yovelaaa was closed Aug 15, 2023
@emarinier
3
cant run staramr
#181 by Hedi65 was closed Aug 10, 2023
3
Duplicated resfinder hits with update to database
#180 by kimyoungw was closed Jun 23, 2023
5
The plasmidfinder.tsv shows that there is no plasmid present
#178 by qianxin-kxy was closed Jun 19, 2023
4
ERROR: ('Error, plasmidfinder database type [{}] is either incorrect or plasmidfinder database not installed properly', 'enterobacteriaceae')
#177 by qianxin-kxy was closed Jun 3, 2023
2
start and end position
#176 by vappiah was closed Jun 2, 2023
1
AttributeError: 'float' object has no attribute 'split'
#175 by vappiah was closed Aug 16, 2023
@emarinier
5
Error: multiple matches for gene=gyrA
#174 by stanikae was closed Aug 10, 2023
@emarinier
3
Include CGE-Predicted Phenotype results in summary results
#171 by apetkau was closed May 26, 2023
1
Include CGE-Predicted Phenotypes for PointFinder results
#170 by apetkau was closed Aug 10, 2023
@emarinier
3
PlasmidFinder database enterobacteriaceae no longer an option
#169 by eam12 was closed Jul 21, 2023
1
@emarinier
1
Available MLST scheme list is out of date
#168 by eam12 was closed Aug 2, 2023
@emarinier
4
staramr db info error: [Errno 2] No such file or directory: 'mlst'
#166 by FeMa94 was closed Aug 2, 2023
4
Include drug resistances from PointFinder in StarAMR report duplicate This issue or pull request already exists enhancement New feature or request
#165 by apetkau was closed Aug 3, 2023
1
Change sensitive to susceptible in report enhancement New feature or request
#164 by apetkau was closed Jul 21, 2023
@emarinier
1
Bioconda channel order
#162 by lenorakepler was closed Dec 9, 2022
2
Some plasmidfinder blast results causing staramr to crash
#158 by apetkau was closed Oct 26, 2022
1
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